[1] Haozhe Wang¹, Yue Wang^1，*, Jingxian Zhou¹, Bowen Song¹, Gang Tu, Anh Nguyen, Jionglong Su, Frans Coenen, Zhi Wei, Daniel J. Rigden, Jia Meng *, Statistical modeling of single-cell epitranscriptomics enabled trajectory and regulatory inference of RNA methylation, Cell Genomics, 2025. (共同通讯兼一作，IF: 11.1).

[2] Yiyou Song¹, Bowen Song¹, Daiyun Huang, Anh Nguyen, Lihong Hu, Jia Meng, Yue Wang*, Multimodal zero-shot learning of previously unseen epitranscriptomes from RNA-seq data, Briefings in Bioinformatics, 2025. (通讯作者，IF: 9.5).

[3] Haozhe Wang, Kunqi Chen, Zhen Wei, Bowen Song, Manli Zhu, Jionglong Su, Anh Nguyen, Jia Meng, Yue Wang*, Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome,Comput Struct Biotechnol J, 2025. (通讯作者，IF: 4.4).

[4] Wenyu Lu, Xiaoqian Peng, Yan Huang, Zhe Zheng, Zhenzhen Zhu, Xunkai Yin, Wenzhuo Xu, Shulan Mei, Xiuhong Lu*, Xia Zhang*, Yue Wang*, Lihong Hu*, Jian Liu* Machine Learning-Guided Generation of Novel Pseudo-Natural Products: Applications to Accelerate Drug Discovery. J. Chem. Inf. Model., 2025. (共同通讯，IF: 5.6).

[5] Jiaming Huang ¹ , Xuan Wang ¹ , Rong Xia ¹ , Dongqing Yang, Jian Liu, Qi Lv, Xiaoxuan Yu, Jia Meng, Kunqi Chen, Bowen Song * and Yue Wang *, Domain-knowledge enabled ensemble learning of 5-formylcytosine (f5C) modification sites. Comput Struct Biotechnol J, 2024. (共同通讯，IF: 4.4).

[6] Yiyou Song, Yue Wang*, Xuan Wang, Daiyun Huang, Anh Nguyen, Jia Meng. Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes, Briefings in Bioinformatics, 2023. (通讯作者，IF: 9.5).

[7] Yue Wang, Zhen Wei, Jionglong Su, Frans Coenen and Jia Meng*, RgnTX: colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity. Comput Struct Biotechnol J, 2023. (第一作者，IF: 4.4).

[8] Yue Wang, Xuan Wang, Xiaodong Cui, Jia Meng, Rong Rong*, Self-attention enabled deep learning of dihydrouridine (D) modification on mRNAs unveiled a distinct sequence signature from tRNAs, Molecular Therapy-Nucleic Acids, 2023. (第一作者，IF: 6.7).

[9] Yue Wang, Kunqi Chen, Zhen Wei, Frans Coenen, Jionglong Su, Jia Meng*. MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, Bioinformatics, 2021, (第一作者，IF: 5.4).

[1] 国家自然科学基金委员会, 青年科学基金项目（C类）[原青年科学基金项目]，32400527，解析RNA修饰测序技术的同源异构体模糊性问题及其在表观转录组分析中的研究，2025/01-2027/12，30万元，主持

[2] 南京中医药大学校特聘教授（C类）人才项目，2023/10-2026/09，40万元，主持

[3] 国家自然科学基金委员会, 联合基金项目, U24A20785, 菊科苦味类中药通过抑制NLRP3炎症小体活化治疗非可控性炎症相关疾病的物质基础及作用机制研究，2025/01-2028/12，260万元，参与

[4] 中国中医科学院科技创新工程项目, CI2023C042LH,基于量丰特征性成分阐明抗炎中药传统功效物质基础及其作用机制，2025/01-2028/01，60万元，参与

[5] 江苏省科学技术厅重大专项, NLRP3免疫调控新机制的解析与原创小分子药物的研发, 2025-2030，1000万元，参与

[1] Haozhe Wang¹, Yue Wang^1，*, Jingxian Zhou¹, Bowen Song¹, Gang Tu, Anh Nguyen, Jionglong Su, Frans Coenen, Zhi Wei, Daniel J. Rigden, Jia Meng *, Statistical modeling of single-cell epitranscriptomics enabled trajectory and regulatory inference of RNA methylation, Cell Genomics, 2025. (共同通讯兼一作，IF: 11.1).

[2] Yiyou Song¹, Bowen Song¹, Daiyun Huang, Anh Nguyen, Lihong Hu, Jia Meng, Yue Wang*, Multimodal zero-shot learning of previously unseen epitranscriptomes from RNA-seq data, Briefings in Bioinformatics, 2025. (通讯作者，IF: 9.5).

[3] Haozhe Wang, Kunqi Chen, Zhen Wei, Bowen Song, Manli Zhu, Jionglong Su, Anh Nguyen, Jia Meng, Yue Wang*, Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome,Comput Struct Biotechnol J, 2025. (通讯作者，IF: 4.4).

[4] Wenyu Lu, Xiaoqian Peng, Yan Huang, Zhe Zheng, Zhenzhen Zhu, Xunkai Yin, Wenzhuo Xu, Shulan Mei, Xiuhong Lu*, Xia Zhang*, Yue Wang*, Lihong Hu*, Jian Liu* Machine Learning-Guided Generation of Novel Pseudo-Natural Products: Applications to Accelerate Drug Discovery. J. Chem. Inf. Model., 2025. (共同通讯，IF: 5.6).

[5] Jiaming Huang ¹ , Xuan Wang ¹ , Rong Xia ¹ , Dongqing Yang, Jian Liu, Qi Lv, Xiaoxuan Yu, Jia Meng, Kunqi Chen, Bowen Song * and Yue Wang *, Domain-knowledge enabled ensemble learning of 5-formylcytosine (f5C) modification sites. Comput Struct Biotechnol J, 2024. (共同通讯，IF: 4.4).

[6] Yiyou Song, Yue Wang*, Xuan Wang, Daiyun Huang, Anh Nguyen, Jia Meng. Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes, Briefings in Bioinformatics, 2023. (通讯作者，IF: 9.5).

[7] Yue Wang, Zhen Wei, Jionglong Su, Frans Coenen and Jia Meng*, RgnTX: colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity. Comput Struct Biotechnol J, 2023. (第一作者，IF: 4.4).

[8] Yue Wang, Xuan Wang, Xiaodong Cui, Jia Meng, Rong Rong*, Self-attention enabled deep learning of dihydrouridine (D) modification on mRNAs unveiled a distinct sequence signature from tRNAs, Molecular Therapy-Nucleic Acids, 2023. (第一作者，IF: 6.7).

[9] Yue Wang, Kunqi Chen, Zhen Wei, Frans Coenen, Jionglong Su, Jia Meng*. MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, Bioinformatics, 2021, (第一作者，IF: 5.4).